Shuhei A. Horiguchi

Shuhei A. Horiguchi (堀口 修平) is a Doctoral student at the Laboratory for Quantitative Biology, Institute of Industrial Science, the University of Tokyo.

I am interested in an analogy between artificial and biological systems.

Research interest:

  • Information processing in the multicellular system (e.g., immune system, nervous system)
  • Robotics / Computer science

Programming Tutorial

Programming tutorial for scientists.

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Theory of The Immune System

Understanding the immune system with the learning theory.

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Article - Physical Review Research 2023

Cellular gradient flow structure linking single-cell-level rules and population-level dynamics

June 2023

Article - arXiv 2022 BO

Linear Embedding-based High-dimensional Batch Bayesian Optimization without Reconstruction Mappings

November 2022

Conference - JSMB 2020

A reinforcemnet learning model of the immune system and its implication about functionality of the thymus

September 2020

Article - Nature Protocols 2019

Advanced CUBIC tissue clearing for whole-organ cell profiling

November 2019


Research Fellowship for Young Scientists (DC1)

The Japan Society for the Promotion of Science (JSPS)

April 2021 - Present

Part-time Software Engineer

CUBICStars Co., Ltd.

April 2020 - Present

Research Assistant (WINGS-ABC)

The University of Tokyo

July 2019 - March 2021

Part-time Research Engineer

Epistra Inc.

April 2018 - Present

Part-time Software Engineer

Robotic Biology Institute Inc.

December 2016 - March 2018


The University of Tokyo

Doctoral student
Department of Mathematical Informatics, Graduate School of Information Science and Technology

April 2021 - Present

The University of Tokyo

Master of Engineering
Department of Electrical Engineering and Information Systems, Graduate School of Engineering

April 2019 - March 2021

Osaka University

Bachelor of Engineering
Division of Biophysical Engineering, Department of Systems Science, School of Engineering Science

April 2015 - March 2019
Nifty tech tag lists from Wouter Beeftink